PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca35574.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 311aa    MW: 34526.5 Da    PI: 5.2904
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca35574.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.74.6e-361513311129
         NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLv 107
                 d+el  +yLk kv gk+l   ++++evd+yk+ Pw+Lp k ++k+++ +wyf ++r+k+y+  +r nr+t +gyWk+tg d++    k+++vg  ktLv
  Dca35574.1  15 DDELFLFYLKGKVLGKSLGP-QMMSEVDVYKFAPWELPaKaCIKTRDLNWYFLCPRSKNYPDAERFNRVTVHGYWKSTGVDRTYNF-KNRTVGKIKTLV 111
                 99***************988.88**************95347888888***********************************999.8899******** PP

         NAM 108 fykgrapkgektdWvmheyrle 129
                 f++g++pkge+t+Wvmheyrle
  Dca35574.1 112 FHRGKTPKGERTNWVMHEYRLE 133
                 ********************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.1945155IPR003441NAC domain
SuperFamilySSF1019415.49E-4413155IPR003441NAC domain
PfamPF023654.8E-1615132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MTITRVGLGP QSWADDELFL FYLKGKVLGK SLGPQMMSEV DVYKFAPWEL PAKACIKTRD  60
LNWYFLCPRS KNYPDAERFN RVTVHGYWKS TGVDRTYNFK NRTVGKIKTL VFHRGKTPKG  120
ERTNWVMHEY RLEDKTLLDK GVAQDSYVIC KIYEKSGSGP KNGECYGAPF VEEEWESDSD  180
DSTPVVCNLE KSGTGGRNAV STVASTVDVG QSSAGPPTPS SVHEPPCAAL EGLLPNETEE  240
DEIEKWLTMF TEKNGIQKSD SRSLGNGLGD SDGSSSTWET GFDWSKLQSE DYSLDFGAAG  300
SVGVKHRRIG D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-381516127171NO APICAL MERISTEM PROTEIN
1ut4_B1e-381516127171NO APICAL MERISTEM PROTEIN
1ut7_A1e-381516127171NO APICAL MERISTEM PROTEIN
1ut7_B1e-381516127171NO APICAL MERISTEM PROTEIN
3swm_A2e-381516130174NAC domain-containing protein 19
3swm_B2e-381516130174NAC domain-containing protein 19
3swm_C2e-381516130174NAC domain-containing protein 19
3swm_D2e-381516130174NAC domain-containing protein 19
3swp_A2e-381516130174NAC domain-containing protein 19
3swp_B2e-381516130174NAC domain-containing protein 19
3swp_C2e-381516130174NAC domain-containing protein 19
3swp_D2e-381516130174NAC domain-containing protein 19
4dul_A1e-381516127171NAC domain-containing protein 19
4dul_B1e-381516127171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674451.16e-90PREDICTED: NAC domain-containing protein 78-like
SwissprotQ84K004e-58NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A0J8FE276e-90A0A0J8FE27_BETVU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.12e-59NAC domain containing protein 103